IL_4WRA_024

3D structure

PDB id

4WRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CGGCCAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WRA_024 not in the Motif Atlas

Homologous match to IL_4LFB_020

Geometric discrepancy: 0.0685

The information below is about IL_4LFB_020

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

4WRA|1|13|C|504
4WRA|1|13|G|505
4WRA|1|13|G|506
4WRA|1|13|C|507
4WRA|1|13|C|508
4WRA|1|13|A|509
4WRA|1|13|A|510
4WRA|1|13|C|511
*
4WRA|1|13|G|540
4WRA|1|13|G|541

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 3E

30S ribosomal protein S4

Chain 3I

30S ribosomal protein S12