IL_4WRA_068

3D structure

PDB id

4WRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CAA*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CAA,UUG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WRA_068 not in the Motif Atlas

Geometric match to IL_8GLP_173

Geometric discrepancy: 0.3673

The information below is about IL_8GLP_173

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4WRA|1|14|C|4
4WRA|1|14|A|5
4WRA|1|14|A|6
*
4WRA|1|14|U|2897
4WRA|1|14|U|2898
4WRA|1|14|G|2899

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L13