IL_4WRA_107
3D structure
- PDB id
- 4WRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.05 Å
Loop
- Sequence
- GGUAAAG*CGAAAAUGAUCGGGGC
- Length
- 23 nucleotides
- Bulged bases
- 4WRA|1|14|U|1026, 4WRA|1|14|A|1127, 4WRA|1|14|U|1130
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4WRA_107 not in the Motif Atlas
- Geometric match to IL_7RQB_040
- Geometric discrepancy: 0.093
- The information below is about IL_7RQB_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
4WRA|1|14|G|1024
4WRA|1|14|G|1025
4WRA|1|14|U|1026
4WRA|1|14|A|1027
4WRA|1|14|A|1028
4WRA|1|14|A|1029
4WRA|1|14|G|1030
*
4WRA|1|14|C|1124
4WRA|1|14|G|1125
4WRA|1|14|A|1126
4WRA|1|14|A|1127
4WRA|1|14|A|1128
4WRA|1|14|A|1129
4WRA|1|14|U|1130
4WRA|1|14|G|1131
4WRA|1|14|A|1132
4WRA|1|14|U|1133
4WRA|1|14|C|1135
4WRA|1|14|G|1136
4WRA|1|14|G|1137
4WRA|1|14|G|1138
4WRA|1|14|G|1139
4WRA|1|14|C|1140
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L13
- Chain 1J
- 5S ribosomal RNA; 5S rRNA
- Chain 29
- 50S ribosomal protein L3
- Chain 45
- 50S ribosomal protein L16
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