IL_4WRA_237
3D structure
- PDB id
- 4WRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.05 Å
Loop
- Sequence
- GCCG*CUGGU
- Length
- 9 nucleotides
- Bulged bases
- 4WRA|1|1G|U|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4WRA_237 not in the Motif Atlas
- Geometric match to IL_4WF9_110
- Geometric discrepancy: 0.2991
- The information below is about IL_4WF9_110
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_65740.1
- Basepair signature
- cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
4WRA|1|1G|G|1058
4WRA|1|1G|C|1059
4WRA|1|1G|C|1060
4WRA|1|1G|G|1061
*
4WRA|1|1G|C|1195
4WRA|1|1G|U|1196
4WRA|1|1G|G|1197
4WRA|1|1G|G|1198
4WRA|1|1G|U|1199
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain 1A
- 30S ribosomal protein S10
- Chain 1L
- Transfer RNA; tRNA
- Chain 22
- 30S ribosomal protein S3
- Chain 42
- 30S ribosomal protein S5
- Chain 4L
- mRNA
- Chain 5A
- 30S ribosomal protein S14 type Z
- Chain 82
- 30S ribosomal protein S9
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