IL_4WRA_239

3D structure

PDB id

4WRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CGU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CGU,ACG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WRA_239 not in the Motif Atlas

Geometric match to IL_3LA5_001

Geometric discrepancy: 0.1363

The information below is about IL_3LA5_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4WRA|1|1G|C|1119
4WRA|1|1G|G|1120
4WRA|1|1G|U|1121
*
4WRA|1|1G|A|1152
4WRA|1|1G|C|1153
4WRA|1|1G|G|1154

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 1A

30S ribosomal protein S10

Chain 5A

30S ribosomal protein S14 type Z

Chain 82

30S ribosomal protein S9