IL_4WRO_028

3D structure

PDB id

4WRO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GUC*GAUAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WRO_028 not in the Motif Atlas

Geometric match to IL_6CK5_002

Geometric discrepancy: 0.3266

The information below is about IL_6CK5_002

Detailed Annotation

8-nt loop receptor

Broad Annotation

Loop-receptor motif

Motif group

IL_44025.1

Basepair signature

cWW-cWW-tHS-cSH-cSH-cWW

Number of instances in this motif group

3

Unit IDs

4WRO|1|13|G|597||||P_1
4WRO|1|13|U|598||||P_1
4WRO|1|13|C|599||||P_1
*
4WRO|1|13|G|639||||P_1
4WRO|1|13|A|640||||P_1
4WRO|1|13|U|641||||P_1
4WRO|1|13|A|642||||P_1
4WRO|1|13|C|643||||P_1

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 7E

30S ribosomal protein S8

Chain 8I

30S ribosomal protein S17