3D structure

PDB id
4WSD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
GACCC*GUUC
Length
9 nucleotides
Bulged bases
None detected
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WSD_011 not in the Motif Atlas
Geometric match to IL_4PHY_006
Geometric discrepancy: 0.3843
The information below is about IL_4PHY_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_68909.1
Basepair signature
cWW-L-R-L-R-L-cWW
Number of instances in this motif group
6

Unit IDs

4WSD|1|13|G|184
4WSD|1|13|A|185
4WSD|1|13|C|186
4WSD|1|13|C|186|||A
4WSD|1|13|C|186|||B
*
4WSD|1|13|G|191|||E
4WSD|1|13|U|191|||F
4WSD|1|13|U|192
4WSD|1|13|C|193

Current chains

Chain 13
16S ribosomal RNA

Nearby chains

Chain BI
30S ribosomal protein S20

Coloring options:


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