IL_4WSD_011
3D structure
- PDB id
- 4WSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GACCC*GUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4WSD_011 not in the Motif Atlas
- Geometric match to IL_4PHY_006
- Geometric discrepancy: 0.3843
- The information below is about IL_4PHY_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_68909.1
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
4WSD|1|13|G|184
4WSD|1|13|A|185
4WSD|1|13|C|186
4WSD|1|13|C|186|||A
4WSD|1|13|C|186|||B
*
4WSD|1|13|G|191|||E
4WSD|1|13|U|191|||F
4WSD|1|13|U|192
4WSD|1|13|C|193
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain BI
- 30S ribosomal protein S20
Coloring options: