IL_4WSD_040
3D structure
- PDB id
- 4WSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GCA*UUCCC
- Length
- 8 nucleotides
- Bulged bases
- 4WSD|1|13|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4WSD_040 not in the Motif Atlas
- Homologous match to IL_5J7L_041
- Geometric discrepancy: 0.1565
- The information below is about IL_5J7L_041
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_47078.3
- Basepair signature
- cWW-cWS-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
4WSD|1|13|G|933
4WSD|1|13|C|934
4WSD|1|13|A|935
*
4WSD|1|13|U|1380
4WSD|1|13|U|1381
4WSD|1|13|C|1382
4WSD|1|13|C|1383
4WSD|1|13|C|1384
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 2K
- Transfer RNA; tRNA
- Chain 3K
- Transfer RNA; tRNA
- Chain 4K
- mRNA
- Chain 6E
- 30S ribosomal protein S7
- Chain 8E
- 30S ribosomal protein S9
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