3D structure

PDB id
4WSD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
CUAG*CGAAG
Length
9 nucleotides
Bulged bases
4WSD|1|14|A|1554
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WSD_120 not in the Motif Atlas
Homologous match to IL_7RQB_057
Geometric discrepancy: 0.0715
The information below is about IL_7RQB_057
Detailed Annotation
tSH-tHW
Broad Annotation
No text annotation
Motif group
IL_04059.1
Basepair signature
cWW-tWH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

4WSD|1|14|C|1437
4WSD|1|14|U|1438
4WSD|1|14|A|1439
4WSD|1|14|G|1440
*
4WSD|1|14|C|1551
4WSD|1|14|G|1552
4WSD|1|14|A|1553
4WSD|1|14|A|1554
4WSD|1|14|G|1555

Current chains

Chain 14
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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