3D structure

PDB id
4WSD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
CCUCU*AUG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WSD_165 not in the Motif Atlas
Homologous match to IL_7RQB_104
Geometric discrepancy: 0.0948
The information below is about IL_7RQB_104
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_63596.6
Basepair signature
cWW-cWS-cSH-tWH-cWW-L
Number of instances in this motif group
14

Unit IDs

4WSD|1|14|C|2680
4WSD|1|14|C|2681
4WSD|1|14|U|2682
4WSD|1|14|C|2683
4WSD|1|14|U|2684
*
4WSD|1|14|A|2725
4WSD|1|14|U|2726
4WSD|1|14|G|2727

Current chains

Chain 14
23S ribosomal RNA

Nearby chains

Chain 25
50S ribosomal protein L14
Chain 29
50S ribosomal protein L3
Chain 55
50S ribosomal protein L17
Chain 75
50S ribosomal protein L19

Coloring options:


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