IL_4WSD_168

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

4WSD|1|14|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSD_168 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.1564

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4WSD|1|14|G|2737
4WSD|1|14|A|2738
4WSD|1|14|U|2739
4WSD|1|14|A|2740
4WSD|1|14|A|2741
4WSD|1|14|C|2742
*
4WSD|1|14|G|2762
4WSD|1|14|G|2763
4WSD|1|14|A|2764
4WSD|1|14|A|2765
4WSD|1|14|G|2766
4WSD|1|14|C|2767

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L13

Chain 59

50S ribosomal protein L6