IL_4WSD_172

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSD_172 not in the Motif Atlas

Homologous match to IL_7RQB_110

Geometric discrepancy: 0.0781

The information below is about IL_7RQB_110

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_83162.5

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

4WSD|1|14|U|2847
4WSD|1|14|G|2848
4WSD|1|14|U|2849
4WSD|1|14|A|2850
4WSD|1|14|A|2851
4WSD|1|14|G|2852
*
4WSD|1|14|U|2865
4WSD|1|14|U|2866
4WSD|1|14|G|2867
4WSD|1|14|A|2868
4WSD|1|14|G|2869

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 55

50S ribosomal protein L17

Chain 75

50S ribosomal protein L19