3D structure

PDB id
4WSD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
UACAAAG*CAAAAAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WSD_236 not in the Motif Atlas
Homologous match to IL_4LFB_051
Geometric discrepancy: 0.1717
The information below is about IL_4LFB_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_09129.2
Basepair signature
cWW-L-R-tWH-L-R-L-tWW-cWW
Number of instances in this motif group
2

Unit IDs

4WSD|1|1G|U|1247
4WSD|1|1G|A|1248
4WSD|1|1G|C|1249
4WSD|1|1G|A|1250
4WSD|1|1G|A|1251
4WSD|1|1G|A|1252
4WSD|1|1G|G|1253
*
4WSD|1|1G|C|1284
4WSD|1|1G|A|1285
4WSD|1|1G|A|1286
4WSD|1|1G|A|1287
4WSD|1|1G|A|1288
4WSD|1|1G|A|1289
4WSD|1|1G|G|1290

Current chains

Chain 1G
16S ribosomal RNA

Nearby chains

Chain 1A
30S ribosomal protein S10
Chain 1B
30S ribosomal protein Thx
Chain 5A
30S ribosomal protein S14 type Z
Chain 62
30S ribosomal protein S7
Chain 82
30S ribosomal protein S9

Coloring options:


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