3D structure

PDB id
4WSD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
GAUG*CUAAUC
Length
10 nucleotides
Bulged bases
4WSD|1|1G|U|1257, 4WSD|1|1G|A|1280, 4WSD|1|1G|U|1281
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WSD_237 not in the Motif Atlas
Homologous match to IL_4LFB_052
Geometric discrepancy: 0.143
The information below is about IL_4LFB_052
Detailed Annotation
180 degree turn
Broad Annotation
No text annotation
Motif group
IL_11344.2
Basepair signature
cWW-cSS-L-cWW
Number of instances in this motif group
2

Unit IDs

4WSD|1|1G|G|1255
4WSD|1|1G|A|1256
4WSD|1|1G|U|1257
4WSD|1|1G|G|1258
*
4WSD|1|1G|C|1277
4WSD|1|1G|U|1278
4WSD|1|1G|A|1279
4WSD|1|1G|A|1280
4WSD|1|1G|U|1281
4WSD|1|1G|C|1282

Current chains

Chain 1G
16S ribosomal RNA

Nearby chains

Chain 1A
30S ribosomal protein S10
Chain 22
30S ribosomal protein S3
Chain 5A
30S ribosomal protein S14 type Z

Coloring options:


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