IL_4WSD_261

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGAAU*AUAG

Length

9 nucleotides

Bulged bases

4WSD|1|1H|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSD_261 not in the Motif Atlas

Homologous match to IL_7RQB_011

Geometric discrepancy: 0.107

The information below is about IL_7RQB_011

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4WSD|1|1H|C|280
4WSD|1|1H|G|281
4WSD|1|1H|A|282
4WSD|1|1H|A|283
4WSD|1|1H|U|284
*
4WSD|1|1H|A|357
4WSD|1|1H|U|358
4WSD|1|1H|A|359
4WSD|1|1H|G|360

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains