IL_4WSD_289
3D structure
- PDB id
- 4WSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GGUAAAG*CGAAAAUGAUCGGGGC
- Length
- 23 nucleotides
- Bulged bases
- 4WSD|1|1H|A|1127, 4WSD|1|1H|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4WSD_289 not in the Motif Atlas
- Geometric match to IL_7RQB_040
- Geometric discrepancy: 0.0736
- The information below is about IL_7RQB_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
4WSD|1|1H|G|1024
4WSD|1|1H|G|1025
4WSD|1|1H|U|1026
4WSD|1|1H|A|1027
4WSD|1|1H|A|1028
4WSD|1|1H|A|1029
4WSD|1|1H|G|1030
*
4WSD|1|1H|C|1124
4WSD|1|1H|G|1125
4WSD|1|1H|A|1126
4WSD|1|1H|A|1127
4WSD|1|1H|A|1128
4WSD|1|1H|A|1129
4WSD|1|1H|U|1130
4WSD|1|1H|G|1131
4WSD|1|1H|A|1132
4WSD|1|1H|U|1133
4WSD|1|1H|C|1135
4WSD|1|1H|G|1136
4WSD|1|1H|G|1137
4WSD|1|1H|G|1138
4WSD|1|1H|G|1139
4WSD|1|1H|C|1140
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 16
- 5S ribosomal RNA; 5S rRNA
- Chain 21
- 50S ribosomal protein L3
- Chain 58
- 50S ribosomal protein L13
- Chain 88
- 50S ribosomal protein L16
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