IL_4WSD_301

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GCAAU*AGC

Length

8 nucleotides

Bulged bases

4WSD|1|1H|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSD_301 not in the Motif Atlas

Homologous match to IL_7RQB_051

Geometric discrepancy: 0.077

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

4WSD|1|1H|G|1319
4WSD|1|1H|C|1320
4WSD|1|1H|A|1321
4WSD|1|1H|A|1322
4WSD|1|1H|U|1323
*
4WSD|1|1H|A|1331
4WSD|1|1H|G|1332
4WSD|1|1H|C|1333

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain E8

50S ribosomal protein L22

Chain F8

50S ribosomal protein L23