IL_4WSD_303

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSD_303 not in the Motif Atlas

Homologous match to IL_7RQB_053

Geometric discrepancy: 0.176

The information below is about IL_7RQB_053

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

4WSD|1|1H|U|1357
4WSD|1|1H|G|1358
4WSD|1|1H|A|1359
4WSD|1|1H|A|1360
4WSD|1|1H|G|1361
*
4WSD|1|1H|C|1370
4WSD|1|1H|G|1371
4WSD|1|1H|U|1372
4WSD|1|1H|A|1373
4WSD|1|1H|G|1374

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain J8

50S ribosomal protein L28

Chain P8

50S ribosomal protein L34