IL_4WSD_305

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

4WSD|1|1H|U|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSD_305 not in the Motif Atlas

Homologous match to IL_7RQB_055

Geometric discrepancy: 0.0974

The information below is about IL_7RQB_055

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

4WSD|1|1H|C|1417
4WSD|1|1H|G|1418
4WSD|1|1H|A|1419
4WSD|1|1H|U|1420
4WSD|1|1H|G|1421
*
4WSD|1|1H|C|1577
4WSD|1|1H|U|1578
4WSD|1|1H|A|1579
4WSD|1|1H|A|1580
4WSD|1|1H|G|1581

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains