IL_4WSD_313

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

4WSD|1|1H|C|1544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSD_313 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.2965

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4WSD|1|1H|G|1526
4WSD|1|1H|G|1527
4WSD|1|1H|A|1528
4WSD|1|1H|A|1529
4WSD|1|1H|G|1530
*
4WSD|1|1H|U|1541
4WSD|1|1H|G|1542
4WSD|1|1H|A|1543
4WSD|1|1H|C|1544
4WSD|1|1H|A|1545
4WSD|1|1H|A|1545|||A
4WSD|1|1H|C|1546

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains