IL_4WSD_336

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGUGG*CCACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGUGG,CCACC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSD_336 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.358

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

4WSD|1|1H|G|2120
4WSD|1|1H|G|2121
4WSD|1|1H|U|2122
4WSD|1|1H|G|2123
4WSD|1|1H|G|2124
*
4WSD|1|1H|C|2174
4WSD|1|1H|C|2175
4WSD|1|1H|A|2176
4WSD|1|1H|C|2177
4WSD|1|1H|C|2178

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 3K

Transfer RNA; tRNA