IL_4WSD_354

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

4WSD|1|1H|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSD_354 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.0651

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

4WSD|1|1H|U|2636
4WSD|1|1H|U|2637
4WSD|1|1H|G|2638
4WSD|1|1H|A|2639
4WSD|1|1H|G|2640
*
4WSD|1|1H|C|2774
4WSD|1|1H|A|2775
4WSD|1|1H|A|2776
4WSD|1|1H|G|2777
4WSD|1|1H|A|2778
4WSD|1|1H|U|2779
4WSD|1|1H|G|2780
4WSD|1|1H|A|2781
4WSD|1|1H|G|2782

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L3

Chain 58

50S ribosomal protein L13