IL_4WSD_355

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSD_355 not in the Motif Atlas

Geometric match to IL_7RQB_103

Geometric discrepancy: 0.1307

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4WSD|1|1H|C|2652
4WSD|1|1H|U|2653
4WSD|1|1H|A|2654
4WSD|1|1H|G|2655
4WSD|1|1H|U|2656
4WSD|1|1H|A|2657
4WSD|1|1H|C|2658
*
4WSD|1|1H|G|2663
4WSD|1|1H|G|2664
4WSD|1|1H|A|2665
4WSD|1|1H|C|2666
4WSD|1|1H|C|2667
4WSD|1|1H|G|2668

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 51

50S ribosomal protein L6