IL_4WSD_357

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

4WSD|1|1H|U|2689, 4WSD|1|1H|C|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSD_357 not in the Motif Atlas

Homologous match to IL_7RQB_105

Geometric discrepancy: 0.0699

The information below is about IL_7RQB_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08296.3

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

4WSD|1|1H|U|2687
4WSD|1|1H|U|2688
4WSD|1|1H|U|2689
4WSD|1|1H|C|2690
4WSD|1|1H|C|2691
*
4WSD|1|1H|G|2718
4WSD|1|1H|G|2719
4WSD|1|1H|U|2720
4WSD|1|1H|A|2721
4WSD|1|1H|G|2722

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L3

Chain 98

50S ribosomal protein L17

Chain B8

50S ribosomal protein L19