3D structure

PDB id
4WSD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
ACUCUG*CUGU
Length
10 nucleotides
Bulged bases
4WSD|1|14|G|1992
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WSD_390 not in the Motif Atlas
Homologous match to IL_9DFE_067
Geometric discrepancy: 0.0752
The information below is about IL_9DFE_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_76758.2
Basepair signature
cWW-L-R-L-cWW-L-L
Number of instances in this motif group
7

Unit IDs

4WSD|1|14|A|1669
4WSD|1|14|C|1670
4WSD|1|14|U|1671
4WSD|1|14|C|1672
4WSD|1|14|U|1673
4WSD|1|14|G|1674
*
4WSD|1|14|C|1990
4WSD|1|14|U|1991
4WSD|1|14|G|1992
4WSD|1|14|U|1993

Current chains

Chain 14
23S ribosomal RNA

Nearby chains

Chain 25
50S ribosomal protein L14
Chain 29
50S ribosomal protein L3

Coloring options:


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