IL_4WSD_400

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

4WSD|1|1H|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSD_400 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.142

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4WSD|1|1H|C|844
4WSD|1|1H|G|845
4WSD|1|1H|C|846
4WSD|1|1H|U|847
4WSD|1|1H|G|848
4WSD|1|1H|A|849
4WSD|1|1H|C|850
*
4WSD|1|1H|G|928
4WSD|1|1H|G|929
4WSD|1|1H|U|930
4WSD|1|1H|G|931
4WSD|1|1H|G|932
4WSD|1|1H|A|933
4WSD|1|1H|G|934

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain L8

50S ribosomal protein L30