IL_4WSM_082

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

4WSM|1|14|U|504, 4WSM|1|14|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSM_082 not in the Motif Atlas

Homologous match to IL_7RQB_014

Geometric discrepancy: 0.0661

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

4WSM|1|14|G|481
4WSM|1|14|A|482
4WSM|1|14|A|483
4WSM|1|14|C|484
*
4WSM|1|14|G|496
4WSM|1|14|A|497
4WSM|1|14|G|498
4WSM|1|14|U|499
4WSM|1|14|G|500
4WSM|1|14|A|501
4WSM|1|14|A|502
4WSM|1|14|A|503
4WSM|1|14|U|504
4WSM|1|14|A|505
4WSM|1|14|G|506
4WSM|1|14|A|507
4WSM|1|14|G|508
4WSM|1|14|C|509

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain A5

50S ribosomal protein L22

Chain C5

50S ribosomal protein L24