IL_4WSM_097

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GA*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSM_097 not in the Motif Atlas

Homologous match to IL_7RQB_028

Geometric discrepancy: 0.1455

The information below is about IL_7RQB_028

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_42622.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

33

Unit IDs

4WSM|1|14|G|862
4WSM|1|14|A|863
*
4WSM|1|14|U|913
4WSM|1|14|C|914
4WSM|1|14|C|915

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 1J

5S ribosomal RNA; 5S rRNA

Chain 45

50S ribosomal protein L16