IL_4WSM_105

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

4WSM|1|14|C|1005

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSM_105 not in the Motif Atlas

Homologous match to IL_5J7L_278

Geometric discrepancy: 0.1255

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

4WSM|1|14|C|1004
4WSM|1|14|C|1005
4WSM|1|14|C|1006
4WSM|1|14|C|1007
4WSM|1|14|C|1008
4WSM|1|14|A|1009
4WSM|1|14|A|1010
4WSM|1|14|G|1011
*
4WSM|1|14|C|1150
4WSM|1|14|G|1151

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L13

Chain 85

50S ribosomal protein L20