IL_4WSM_142

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGGAG*CGAACC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSM_142 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.3608

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_06136.2

Basepair signature

cWW-tHS-cWW-tHS-tSH-tSH-cWW

Number of instances in this motif group

6

Unit IDs

4WSM|1|14|G|1855
4WSM|1|14|G|1856
4WSM|1|14|G|1857
4WSM|1|14|G|1858
4WSM|1|14|A|1859
4WSM|1|14|G|1860
*
4WSM|1|14|C|1882
4WSM|1|14|G|1883
4WSM|1|14|A|1884
4WSM|1|14|A|1885
4WSM|1|14|C|1886
4WSM|1|14|C|1887

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 3L

Transfer RNA; tRNA

Chain F5

50S ribosomal protein L28