IL_4WSM_168

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

4WSM|1|14|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSM_168 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.0894

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

4WSM|1|14|U|2636
4WSM|1|14|U|2637
4WSM|1|14|G|2638
4WSM|1|14|A|2639
4WSM|1|14|G|2640
*
4WSM|1|14|C|2774
4WSM|1|14|A|2775
4WSM|1|14|A|2776
4WSM|1|14|G|2777
4WSM|1|14|A|2778
4WSM|1|14|U|2779
4WSM|1|14|G|2780
4WSM|1|14|A|2781
4WSM|1|14|G|2782

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L13

Chain 29

50S ribosomal protein L3