IL_4WSM_181
3D structure
- PDB id
- 4WSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UUCCC*GAACA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4WSM_181 not in the Motif Atlas
- Geometric match to IL_7RQB_114
- Geometric discrepancy: 0.1141
- The information below is about IL_7RQB_114
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.6
- Basepair signature
- cWW-cWS-L-tSW-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
4WSM|1|16|U|34
4WSM|1|16|U|35
4WSM|1|16|C|36
4WSM|1|16|C|37
4WSM|1|16|C|38
*
4WSM|1|16|G|44
4WSM|1|16|A|45
4WSM|1|16|A|46
4WSM|1|16|C|47
4WSM|1|16|A|48
Current chains
- Chain 16
- 5S ribosomal RNA
Nearby chains
- Chain 1H
- Large subunit ribosomal RNA; LSU rRNA
- Chain 41
- 50S ribosomal protein L5
- Chain A8
- 50S ribosomal protein L18
- Chain M8
- 50S ribosomal protein L31
Coloring options: