IL_4WSM_296

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4WSM|1|1H|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSM_296 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1086

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

4WSM|1|1H|C|1208
4WSM|1|1H|G|1209
4WSM|1|1H|A|1210
4WSM|1|1H|U|1211
4WSM|1|1H|G|1212
4WSM|1|1H|A|1213
4WSM|1|1H|A|1214
4WSM|1|1H|G|1215
*
4WSM|1|1H|U|1234
4WSM|1|1H|G|1235
4WSM|1|1H|G|1236
4WSM|1|1H|A|1237
4WSM|1|1H|G|1238

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain C8

50S ribosomal protein L20