IL_4WSM_304

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSM_304 not in the Motif Atlas

Homologous match to IL_7RQB_055

Geometric discrepancy: 0.0978

The information below is about IL_7RQB_055

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

4WSM|1|1H|C|1417
4WSM|1|1H|G|1418
4WSM|1|1H|A|1419
4WSM|1|1H|U|1420
4WSM|1|1H|G|1421
*
4WSM|1|1H|C|1577
4WSM|1|1H|U|1578
4WSM|1|1H|A|1579
4WSM|1|1H|A|1580
4WSM|1|1H|G|1581

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains