IL_4WSM_356

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSM_356 not in the Motif Atlas

Geometric match to IL_7RQB_103

Geometric discrepancy: 0.1514

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4WSM|1|1H|C|2652
4WSM|1|1H|U|2653
4WSM|1|1H|A|2654
4WSM|1|1H|G|2655
4WSM|1|1H|U|2656
4WSM|1|1H|A|2657
4WSM|1|1H|C|2658
*
4WSM|1|1H|G|2663
4WSM|1|1H|G|2664
4WSM|1|1H|A|2665
4WSM|1|1H|C|2666
4WSM|1|1H|C|2667
4WSM|1|1H|G|2668

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 51

50S ribosomal protein L6