IL_4WSM_363

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSM_363 not in the Motif Atlas

Homologous match to IL_7RQB_110

Geometric discrepancy: 0.0897

The information below is about IL_7RQB_110

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_83162.5

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

4WSM|1|1H|U|2847
4WSM|1|1H|G|2848
4WSM|1|1H|U|2849
4WSM|1|1H|A|2850
4WSM|1|1H|A|2851
4WSM|1|1H|G|2852
*
4WSM|1|1H|U|2865
4WSM|1|1H|U|2866
4WSM|1|1H|G|2867
4WSM|1|1H|A|2868
4WSM|1|1H|G|2869

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 13

Small subunit ribosomal RNA; SSU rRNA

Chain 98

50S ribosomal protein L17

Chain B8

50S ribosomal protein L19