IL_4WSM_379

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

ACC*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: ACC,GGU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSM_379 not in the Motif Atlas

Homologous match to IL_5CCB_001

Geometric discrepancy: 0.3452

The information below is about IL_5CCB_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4WSM|1|3K|A|30
4WSM|1|3K|C|31
4WSM|1|3K|C|32
*
4WSM|1|3K|G|40
4WSM|1|3K|G|41
4WSM|1|3K|U|42

Current chains

Chain 3K

tRNA-Leu

Nearby chains

Chain 13

Small subunit ribosomal RNA; SSU rRNA

Chain 2I

30S ribosomal protein S11

Chain 6E

30S ribosomal protein S7