IL_4WSM_388

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

4WSM|1|14|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSM_388 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.175

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4WSM|1|14|C|844
4WSM|1|14|G|845
4WSM|1|14|C|846
4WSM|1|14|U|847
4WSM|1|14|G|848
4WSM|1|14|A|849
4WSM|1|14|C|850
*
4WSM|1|14|G|928
4WSM|1|14|G|929
4WSM|1|14|U|930
4WSM|1|14|G|931
4WSM|1|14|G|932
4WSM|1|14|A|933
4WSM|1|14|G|934

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain H5

50S ribosomal protein L30