IL_4WSM_392

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAGAAG*UGGUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WSM_392 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.312

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_97631.1

Basepair signature

cWW-L-R-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4WSM|1|14|C|1468
4WSM|1|14|A|1469
4WSM|1|14|G|1470
4WSM|1|14|A|1471
4WSM|1|14|A|1472
4WSM|1|14|G|1473
*
4WSM|1|14|U|1520
4WSM|1|14|G|1521
4WSM|1|14|G|1522
4WSM|1|14|U|1523
4WSM|1|14|G|1524

Current chains

Chain 14

23S ribosomal RNA

Nearby chains