IL_4WT1_009

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CUACC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT1_009 not in the Motif Atlas

Homologous match to IL_4LFB_008

Geometric discrepancy: 0.1145

The information below is about IL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60988.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

4WT1|1|13|C|132
4WT1|1|13|U|133
4WT1|1|13|A|134
4WT1|1|13|C|135
4WT1|1|13|C|136
*
4WT1|1|13|G|227
4WT1|1|13|A|228
4WT1|1|13|U|229
4WT1|1|13|G|230

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 7I

30S ribosomal protein S16

Chain BI

30S ribosomal protein S20