IL_4WT1_137

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

4WT1|1|14|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT1_137 not in the Motif Atlas

Homologous match to IL_7RQB_067

Geometric discrepancy: 0.0644

The information below is about IL_7RQB_067

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76273.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

14

Unit IDs

4WT1|1|14|A|1669
4WT1|1|14|C|1670
4WT1|1|14|U|1671
4WT1|1|14|C|1672
4WT1|1|14|U|1673
4WT1|1|14|G|1674
*
4WT1|1|14|C|1990
4WT1|1|14|U|1991
4WT1|1|14|G|1992
4WT1|1|14|U|1993

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L14

Chain 29

50S ribosomal protein L3