IL_4WT1_202

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

4WT1|1|1G|U|244, 4WT1|1|1G|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT1_202 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0758

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4WT1|1|1G|C|242
4WT1|1|1G|A|243
4WT1|1|1G|U|244
4WT1|1|1G|C|245
4WT1|1|1G|A|246
4WT1|1|1G|G|247
*
4WT1|1|1G|C|277
4WT1|1|1G|G|278
4WT1|1|1G|A|279
4WT1|1|1G|C|280
4WT1|1|1G|G|281
4WT1|1|1G|A|282
4WT1|1|1G|C|283
4WT1|1|1G|G|284

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 3A

30S ribosomal protein S12

Chain 8A

30S ribosomal protein S17