IL_4WT1_234

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT1_234 not in the Motif Atlas

Geometric match to IL_4LFB_038

Geometric discrepancy: 0.2322

The information below is about IL_4LFB_038

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

4WT1|1|1G|G|953
4WT1|1|1G|G|954
*
4WT1|1|1G|C|1226
4WT1|1|1G|A|1227
4WT1|1|1G|C|1228

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 1L

Transfer RNA; tRNA

Chain 2L

Transfer RNA; tRNA

Chain 4A

30S ribosomal protein S13

Chain AA

30S ribosomal protein S19