IL_4WT1_244

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GCUC*GAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCUC,GAGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT1_244 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.3309

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4WT1|1|1G|G|1068
4WT1|1|1G|C|1069
4WT1|1|1G|U|1070
4WT1|1|1G|C|1071
*
4WT1|1|1G|G|1104
4WT1|1|1G|A|1105
4WT1|1|1G|G|1106
4WT1|1|1G|C|1107

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 12

30S ribosomal protein S2

Chain 22

30S ribosomal protein S3

Chain 42

30S ribosomal protein S5