IL_4WT1_282

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

4WT1|1|1H|U|504, 4WT1|1|1H|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT1_282 not in the Motif Atlas

Homologous match to IL_7RQB_014

Geometric discrepancy: 0.057

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

4WT1|1|1H|G|481
4WT1|1|1H|A|482
4WT1|1|1H|A|483
4WT1|1|1H|C|484
*
4WT1|1|1H|G|496
4WT1|1|1H|A|497
4WT1|1|1H|G|498
4WT1|1|1H|U|499
4WT1|1|1H|G|500
4WT1|1|1H|A|501
4WT1|1|1H|A|502
4WT1|1|1H|A|503
4WT1|1|1H|U|504
4WT1|1|1H|A|505
4WT1|1|1H|G|506
4WT1|1|1H|A|507
4WT1|1|1H|G|508
4WT1|1|1H|C|509

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain E8

50S ribosomal protein L22

Chain G8

50S ribosomal protein L24