3D structure

PDB id
4WT1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.05 Å

Loop

Sequence
GGUAAAG*CGAAAAUGAUCGGGGC
Length
23 nucleotides
Bulged bases
4WT1|1|1H|A|1127, 4WT1|1|1H|U|1130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WT1_306 not in the Motif Atlas
Geometric match to IL_7RQB_040
Geometric discrepancy: 0.0722
The information below is about IL_7RQB_040
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.1
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

4WT1|1|1H|G|1024
4WT1|1|1H|G|1025
4WT1|1|1H|U|1026
4WT1|1|1H|A|1027
4WT1|1|1H|A|1028
4WT1|1|1H|A|1029
4WT1|1|1H|G|1030
*
4WT1|1|1H|C|1124
4WT1|1|1H|G|1125
4WT1|1|1H|A|1126
4WT1|1|1H|A|1127
4WT1|1|1H|A|1128
4WT1|1|1H|A|1129
4WT1|1|1H|U|1130
4WT1|1|1H|G|1131
4WT1|1|1H|A|1132
4WT1|1|1H|U|1133
4WT1|1|1H|C|1135
4WT1|1|1H|G|1136
4WT1|1|1H|G|1137
4WT1|1|1H|G|1138
4WT1|1|1H|G|1139
4WT1|1|1H|C|1140

Current chains

Chain 1H
23S ribosomal RNA

Nearby chains

Chain 16
5S ribosomal RNA; 5S rRNA
Chain 21
50S ribosomal protein L3
Chain 58
50S ribosomal protein L13
Chain 88
50S ribosomal protein L16

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2497 s