IL_4WT1_308

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CGAAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

4WT1|1|1H|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT1_308 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.1355

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

4WT1|1|1H|C|1043
4WT1|1|1H|G|1044
4WT1|1|1H|A|1045
4WT1|1|1H|A|1046
4WT1|1|1H|G|1047
4WT1|1|1H|A|1048
4WT1|1|1H|C|1049
4WT1|1|1H|A|1050
4WT1|1|1H|G|1051
*
4WT1|1|1H|U|1108
4WT1|1|1H|C|1109
4WT1|1|1H|G|1110
4WT1|1|1H|A|1111
4WT1|1|1H|G|1112

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 51

50S ribosomal protein L6