IL_4WT1_373

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

4WT1|1|1H|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT1_373 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.0731

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

4WT1|1|1H|U|2636
4WT1|1|1H|U|2637
4WT1|1|1H|G|2638
4WT1|1|1H|A|2639
4WT1|1|1H|G|2640
*
4WT1|1|1H|C|2774
4WT1|1|1H|A|2775
4WT1|1|1H|A|2776
4WT1|1|1H|G|2777
4WT1|1|1H|A|2778
4WT1|1|1H|U|2779
4WT1|1|1H|G|2780
4WT1|1|1H|A|2781
4WT1|1|1H|G|2782

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L3

Chain 58

50S ribosomal protein L13