IL_4WT1_401

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

4WT1|1|14|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT1_401 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.1747

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4WT1|1|14|C|844
4WT1|1|14|G|845
4WT1|1|14|C|846
4WT1|1|14|U|847
4WT1|1|14|G|848
4WT1|1|14|A|849
4WT1|1|14|C|850
*
4WT1|1|14|G|928
4WT1|1|14|G|929
4WT1|1|14|U|930
4WT1|1|14|G|931
4WT1|1|14|G|932
4WT1|1|14|A|933
4WT1|1|14|G|934

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain H5

50S ribosomal protein L30