IL_4WT1_414

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GGAAU*GGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT1_414 not in the Motif Atlas

Homologous match to IL_4LFB_065

Geometric discrepancy: 0.0905

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

4WT1|1|1G|G|673
4WT1|1|1G|G|674
4WT1|1|1G|A|675
4WT1|1|1G|A|676
4WT1|1|1G|U|677
*
4WT1|1|1G|G|713
4WT1|1|1G|G|714
4WT1|1|1G|A|715
4WT1|1|1G|A|716
4WT1|1|1G|C|717

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain 2A

30S ribosomal protein S11

Chain 52

30S ribosomal protein S6

Chain 9A

30S ribosomal protein S18